X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 6BQL 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52932.0 M (NH4)2S04, 2 M NaCl, 0.1 NaCacodylate
Crystal Properties
Matthews coefficientSolvent content
2.6249.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.108α = 90
b = 73.108β = 90
c = 120.102γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray193PIXELDECTRIS PILATUS3 2M2019-05-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.10.977410ALS5.0.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.562.4599.9121.42052660
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.58.231

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.562.4549899268099.920.16890.166920.20678RANDOM25.645
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.13-0.130.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.915
r_dihedral_angle_4_deg14.122
r_dihedral_angle_3_deg12.88
r_long_range_B_refined6.036
r_long_range_B_other6.035
r_dihedral_angle_1_deg5.89
r_scangle_other4.089
r_scbond_it2.946
r_scbond_other2.945
r_mcangle_it2.469
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.915
r_dihedral_angle_4_deg14.122
r_dihedral_angle_3_deg12.88
r_long_range_B_refined6.036
r_long_range_B_other6.035
r_dihedral_angle_1_deg5.89
r_scangle_other4.089
r_scbond_it2.946
r_scbond_other2.945
r_mcangle_it2.469
r_mcangle_other2.468
r_angle_refined_deg2.119
r_mcbond_other1.663
r_mcbond_it1.662
r_angle_other_deg0.971
r_chiral_restr0.149
r_bond_refined_d0.024
r_gen_planes_refined0.012
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2231
Nucleic Acid Atoms
Solvent Atoms318
Heterogen Atoms55

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing