8X5M

The Crystal Structure of JNK1 from Biortus.

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2XRW

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.1M Nacacodylate pH6.0, 15% PEG 4000

Crystal Properties
Matthews coefficient	Solvent content
2.46	49.96

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 77.17	α = 90
b = 128.405	β = 90
c = 82.905	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2022-11-19	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	CLSI BEAMLINE 08ID-1	0.95371	CLSI	08ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	19.786	99.9	0.094	17.2	13.5		28200

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.05			0.814

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work	R-Free	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2	19.786	28180	1421	99.841	0.195	0.1926	0.2345	38.81

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.979			1.146		-0.167

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.941
r_dihedral_angle_4_deg	19.549
r_dihedral_angle_3_deg	13.029
r_dihedral_angle_1_deg	6.353
r_lrange_it	5.27
r_lrange_other	5.136
r_scangle_it	3.195
r_scangle_other	3.194
r_mcangle_it	2.927
r_mcangle_other	2.926
r_scbond_it	1.954
r_scbond_other	1.953
r_mcbond_it	1.765
r_mcbond_other	1.765
r_angle_refined_deg	1.162
r_angle_other_deg	1.117
r_symmetry_nbd_refined	0.195
r_nbd_refined	0.192
r_nbd_other	0.17
r_symmetry_nbd_other	0.158
r_nbtor_refined	0.157
r_xyhbond_nbd_refined	0.124
r_symmetry_xyhbond_nbd_refined	0.107
r_symmetry_nbtor_other	0.071
r_chiral_restr	0.067
r_gen_planes_refined	0.004
r_bond_refined_d	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2763
Nucleic Acid Atoms
Solvent Atoms	252
Heterogen Atoms	54

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing