☰ Navigation Tabs
Crystal structure of measles virus fusion inhibitor M1 complexed with F protein HR1 (HR1-42) (P21212 space group)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SVF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 200 mM MgCl2, 27% (w/v) PEG 3350, 100 mM Tris (pH 8.5)
Crystal Properties Matthews coefficient Solvent content 1.88 34.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.038 α = 90 b = 54.78 β = 90 c = 64.623 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1.000000 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.306 50 99.9 0.061 0.998 17.71 6.43 47235
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.306 1.38 99.7 0.431 0.94 3.88 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.306 41.803 47221 2361 99.928 0.181 0.1794 0.18 0.2046 0.2062 18.286
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.203 0.632 -0.835
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.548 r_dihedral_angle_4_deg 15.514 r_dihedral_angle_3_deg 13.011 r_lrange_it 6.459 r_lrange_other 6.187 r_scangle_it 4.178 r_scangle_other 4.177 r_dihedral_angle_1_deg 3.703 r_scbond_it 2.853 r_scbond_other 2.852
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.548 r_dihedral_angle_4_deg 15.514 r_dihedral_angle_3_deg 13.011 r_lrange_it 6.459 r_lrange_other 6.187 r_scangle_it 4.178 r_scangle_other 4.177 r_dihedral_angle_1_deg 3.703 r_scbond_it 2.853 r_scbond_other 2.852 r_mcangle_it 2.261 r_mcangle_other 2.261 r_angle_refined_deg 1.756 r_angle_other_deg 1.625 r_mcbond_it 1.494 r_mcbond_other 1.494 r_symmetry_nbd_refined 0.267 r_nbd_refined 0.231 r_nbd_other 0.22 r_symmetry_xyhbond_nbd_refined 0.203 r_nbtor_refined 0.17 r_xyhbond_nbd_refined 0.164 r_symmetry_nbd_other 0.16 r_symmetry_nbtor_other 0.087 r_chiral_restr 0.082 r_metal_ion_refined 0.036 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1742 Nucleic Acid Atoms Solvent Atoms 342 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing