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Crystal structure of measles virus fusion inhibitor M1 complexed with F protein HR1 (HR1-47) (P321 space group)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SVF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 200 mM Ca Acetate, 15% (w/v) PEG 3350, 100 mM BIS-TRIS (pH 6.5)
Crystal Properties Matthews coefficient Solvent content 2.15 42.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.899 α = 90 b = 32.899 β = 90 c = 124.596 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1.000000 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.104 50 99.1 0.094 0.996 13.02 8.66 32332
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.104 1.17 94.3 0.619 0.969 2 5.25
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.104 41.532 32301 1615 98.983 0.214 0.2127 0.2225 0.2353 0.2481 23.384
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.754 0.377 0.754 -2.445
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.238 r_dihedral_angle_4_deg 12.491 r_dihedral_angle_3_deg 12.426 r_lrange_it 5.8 r_lrange_other 5.391 r_scangle_other 4.415 r_scangle_it 4.409 r_dihedral_angle_1_deg 3.756 r_scbond_it 2.828 r_scbond_other 2.798
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.238 r_dihedral_angle_4_deg 12.491 r_dihedral_angle_3_deg 12.426 r_lrange_it 5.8 r_lrange_other 5.391 r_scangle_other 4.415 r_scangle_it 4.409 r_dihedral_angle_1_deg 3.756 r_scbond_it 2.828 r_scbond_other 2.798 r_mcangle_it 2.448 r_mcangle_other 2.432 r_mcbond_it 1.874 r_mcbond_other 1.853 r_angle_refined_deg 1.773 r_angle_other_deg 1.633 r_metal_ion_refined 0.231 r_nbd_refined 0.23 r_symmetry_xyhbond_nbd_refined 0.208 r_nbd_other 0.177 r_xyhbond_nbd_refined 0.176 r_nbtor_refined 0.168 r_symmetry_nbd_other 0.158 r_symmetry_nbd_refined 0.131 r_chiral_restr 0.092 r_symmetry_nbtor_other 0.079 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 636 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing