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Crystal structure of measles virus fusion inhibitor MEK35GE complexed with F protein HR1 (HR1-42) (P21212 space group)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SVF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 200 mM Zn Acetate, 18% (w/v) PEG 8000, 100 mM MES (pH 6.5)
Crystal Properties Matthews coefficient Solvent content 2.03 39.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.049 α = 90 b = 59.768 β = 90 c = 63.674 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2019-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL45XU 1.000000 SPring-8 BL45XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.457 50 98.6 0.098 0.997 16.92 13.14 37542
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.457 1.55 96.6 0.875 0.968 2.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.457 43.604 37537 1855 98.584 0.178 0.1764 0.1772 0.2081 0.2087 22.054
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.641 -0.395 -1.246
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.953 r_dihedral_angle_4_deg 20.82 r_dihedral_angle_3_deg 14.548 r_lrange_it 6.388 r_lrange_other 6.387 r_scangle_it 5.264 r_scangle_other 5.262 r_dihedral_angle_1_deg 3.756 r_scbond_it 3.523 r_scbond_other 3.522
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.953 r_dihedral_angle_4_deg 20.82 r_dihedral_angle_3_deg 14.548 r_lrange_it 6.388 r_lrange_other 6.387 r_scangle_it 5.264 r_scangle_other 5.262 r_dihedral_angle_1_deg 3.756 r_scbond_it 3.523 r_scbond_other 3.522 r_mcangle_it 2.809 r_mcangle_other 2.804 r_mcbond_it 1.94 r_mcbond_other 1.921 r_angle_refined_deg 1.695 r_angle_other_deg 1.545 r_symmetry_nbd_refined 0.287 r_nbd_refined 0.219 r_symmetry_xyhbond_nbd_refined 0.197 r_metal_ion_refined 0.174 r_nbd_other 0.173 r_xyhbond_nbd_refined 0.172 r_nbtor_refined 0.168 r_symmetry_nbd_other 0.162 r_symmetry_metal_ion_refined 0.089 r_chiral_restr 0.087 r_symmetry_nbtor_other 0.085 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1792 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing