☰ Navigation Tabs
Crystal structure of the Deinococcus wulumuqiensis CD-NTase DwCdnB in complex with hexatungstotellurate(VI) TEW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 0.2 M Ammonium acetate,
0.1 M Tris pH 8.0,
16% w/v Polyethylene glycol 10,000.
Crystal Properties Matthews coefficient Solvent content 2.35 47.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.367 α = 100.48 b = 46.798 β = 104.89 c = 60.374 γ = 100.13
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2021-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE TPS 05A 1.21366 NSRRC TPS 05A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.04 30 96.9 0.1 24.636 6.5 21801
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.04 2.12 0.983
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.04 25.58 19654 1983 95.15 0.18402 0.18083 0.21548 RANDOM 30.573
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.28 0.13 0.08 -0.59 -2.48 2.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.363 r_dihedral_angle_3_deg 14.918 r_dihedral_angle_4_deg 14.309 r_long_range_B_refined 7.664 r_long_range_B_other 7.402 r_dihedral_angle_1_deg 6.194 r_scangle_other 5.814 r_mcangle_it 4.095 r_mcangle_other 4.094 r_scbond_it 3.836
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.363 r_dihedral_angle_3_deg 14.918 r_dihedral_angle_4_deg 14.309 r_long_range_B_refined 7.664 r_long_range_B_other 7.402 r_dihedral_angle_1_deg 6.194 r_scangle_other 5.814 r_mcangle_it 4.095 r_mcangle_other 4.094 r_scbond_it 3.836 r_scbond_other 3.593 r_mcbond_other 2.748 r_mcbond_it 2.747 r_angle_other_deg 1.553 r_angle_refined_deg 1.397 r_chiral_restr 0.066 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2654 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection HKL-2000 data scaling HKL-2000 data reduction