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T450S mutant of repeat domain 2 from Clostridium perfringens adhesin CPE0147 with intramolecular ester bond
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4NI6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.2 M sodium thiocyanate and 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.17 43.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.907 α = 90 b = 44.166 β = 110.107 c = 64.704 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 S 9M 2015-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.953700 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 17.86 97.7 0.018 0.999 20.2 7.1 44396
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.22 93.9 0.186 0.947 3.8 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.2 17.86 44395 2117 97.449 0.143 0.142 0.1432 0.1584 0.1585 random selection 13.799
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.042 0.018 -0.019 -0.029
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.761 r_dihedral_angle_3_deg 10.488 r_dihedral_angle_4_deg 7.984 r_dihedral_angle_1_deg 6.892 r_lrange_it 2.362 r_lrange_other 1.945 r_angle_other_deg 1.403 r_scangle_it 1.393 r_scangle_other 1.392 r_angle_refined_deg 1.336
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.761 r_dihedral_angle_3_deg 10.488 r_dihedral_angle_4_deg 7.984 r_dihedral_angle_1_deg 6.892 r_lrange_it 2.362 r_lrange_other 1.945 r_angle_other_deg 1.403 r_scangle_it 1.393 r_scangle_other 1.392 r_angle_refined_deg 1.336 r_scbond_other 1.08 r_scbond_it 1.075 r_mcangle_it 1.014 r_mcangle_other 1.013 r_rigid_bond_restr 0.719 r_mcbond_it 0.704 r_mcbond_other 0.702 r_nbd_refined 0.281 r_nbd_other 0.186 r_symmetry_nbd_other 0.184 r_symmetry_nbd_refined 0.16 r_nbtor_refined 0.15 r_xyhbond_nbd_refined 0.099 r_symmetry_xyhbond_nbd_refined 0.098 r_metal_ion_refined 0.084 r_symmetry_nbtor_other 0.078 r_chiral_restr 0.063 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1072 Nucleic Acid Atoms Solvent Atoms 197 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing