X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 7CAM 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP29320% Polyethylene glycol monomethyl ether 5.000, 200 mM Potassium formate
Crystal Properties
Matthews coefficientSolvent content
2.0239.2

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 113.67α = 90
b = 53.32β = 101.97
c = 45.2γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS3 6M2022-10-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.10.9184BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9848.12598.60.9678.876.318323
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.982.080.346

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTFREE R-VALUE1.98148.1251832291798.6430.2010.19740.266352.564
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.5040.483-0.793-1.758
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.522
r_dihedral_angle_3_deg14.413
r_dihedral_angle_2_deg11.688
r_lrange_it9.461
r_lrange_other9.461
r_dihedral_angle_1_deg8.247
r_scangle_it7.655
r_scangle_other7.653
r_mcangle_it6.226
r_mcangle_other6.224
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_6_deg14.522
r_dihedral_angle_3_deg14.413
r_dihedral_angle_2_deg11.688
r_lrange_it9.461
r_lrange_other9.461
r_dihedral_angle_1_deg8.247
r_scangle_it7.655
r_scangle_other7.653
r_mcangle_it6.226
r_mcangle_other6.224
r_scbond_it5.417
r_scbond_other5.416
r_mcbond_it4.636
r_mcbond_other4.636
r_angle_refined_deg1.831
r_angle_other_deg0.706
r_nbd_refined0.198
r_xyhbond_nbd_refined0.19
r_nbtor_refined0.172
r_symmetry_nbd_other0.16
r_nbd_other0.116
r_symmetry_nbd_refined0.105
r_chiral_restr0.083
r_symmetry_nbtor_other0.076
r_symmetry_xyhbond_nbd_refined0.06
r_gen_planes_refined0.008
r_bond_refined_d0.007
r_gen_planes_other0.003
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2294
Nucleic Acid Atoms
Solvent Atoms74
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing