☰ Navigation Tabs
CDK2-cyclin A in complex with FragLite 12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6GUC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 Protein at 10 mg/ml. 0.6 to 0.8 M KCl, 0.9 to 1.2 M (NH4)2SO4, and 100 mM HEPES pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.78 55.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.971 α = 90 b = 133.287 β = 90 c = 147.26 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.89842 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 133.29 89.5 0.195 0.21 0.078 0.998 9.4 13.5 55046
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.38 2.42 100 2.006 2.177 0.838 0.6 1.3 13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.394 73.739 50865 2585 87.481 0.221 0.2208 0.2085 0.2281 0.2143 33.438
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.717 1.242 0.474
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.57 r_dihedral_angle_2_deg 16.294 r_dihedral_angle_3_deg 14.872 r_lrange_it 9.548 r_scangle_it 6.443 r_dihedral_angle_1_deg 5.865 r_mcangle_it 4.514 r_scbond_it 4.115 r_mcbond_it 2.815 r_angle_refined_deg 1.567
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.57 r_dihedral_angle_2_deg 16.294 r_dihedral_angle_3_deg 14.872 r_lrange_it 9.548 r_scangle_it 6.443 r_dihedral_angle_1_deg 5.865 r_mcangle_it 4.514 r_scbond_it 4.115 r_mcbond_it 2.815 r_angle_refined_deg 1.567 r_symmetry_nbd_refined 0.337 r_nbtor_refined 0.314 r_symmetry_xyhbond_nbd_refined 0.302 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.101 r_bond_refined_d 0.007 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9030 Nucleic Acid Atoms Solvent Atoms 284 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing