☰ Navigation Tabs
CDK2-cyclin A in complex with FragLite 6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6GUC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 Protein at 10 mg/ml. 0.6 to 0.8 M KCl, 0.9 to 1.2 M (NH4)2SO4, and 100 mM HEPES pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.81 56.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.181 α = 90 b = 133.725 β = 90 c = 147.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2020-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.8984362017286718 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 147.94 94.3 0.136 0.999 12.3 13.5 62435
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 100 1.4 0.71 1.8 13.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.312 99.401 60549 3100 93.016 0.241 0.2394 0.2249 0.2713 0.2593 36.291
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.975 1.573 0.402
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.432 r_dihedral_angle_6_deg 16.61 r_dihedral_angle_3_deg 12.506 r_lrange_it 7.842 r_dihedral_angle_1_deg 5.748 r_scangle_it 4.87 r_mcangle_it 3.905 r_scbond_it 3.034 r_mcbond_it 2.488 r_angle_refined_deg 1.468
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.432 r_dihedral_angle_6_deg 16.61 r_dihedral_angle_3_deg 12.506 r_lrange_it 7.842 r_dihedral_angle_1_deg 5.748 r_scangle_it 4.87 r_mcangle_it 3.905 r_scbond_it 3.034 r_mcbond_it 2.488 r_angle_refined_deg 1.468 r_nbtor_refined 0.31 r_symmetry_nbd_refined 0.234 r_symmetry_xyhbond_nbd_refined 0.22 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.152 r_chiral_restr 0.068 r_bond_refined_d 0.01 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8960 Nucleic Acid Atoms Solvent Atoms 287 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing