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Crystal structure of the PriS_PriL-Rpa2WH ternary complex from P. abyssi
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other NMR structure of RPA2-WH experimental model Other Crystal structure of PriS-PriL1-210
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 291 60% v/vTacsimate
0.1M Bis-Tris prop 7
Crystal Properties Matthews coefficient Solvent content 4.02 69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.815 α = 90 b = 101.505 β = 90 c = 177.805 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M KB Mirrors 2021-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.978565 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 48.8 99.9 0.126 0.131 0.036 1 9.5 13.2 201145 123.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.59 99.5 15.026 15.624 4.24 0.2 0.3 13.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.501 48.8 8875 473 58.5 0.2356 0.2345 0.24 0.2555 0.2769 RANDOM 184.46
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 16.4151 9.6578 -26.0729
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 17.76 t_omega_torsion 2.32 t_angle_deg 0.76 t_bond_d 0.005 t_dihedral_angle_d t_gen_planes t_it t_chiral_improper_torsion t_utility_distance t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5289 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 1
Software Software Software Name Purpose BUSTER refinement XDS data reduction XDS data scaling STARANISO data scaling PHASER phasing