☰ Navigation Tabs
The structure of Candida albicans phosphoglucose isomerase in complex with a fragment
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9FZT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M MgCl2, 0.1 M Hepes-NaOH pH 7.0, 21 % PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.44 49.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.1 α = 90 b = 87.359 β = 90 c = 101.309 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2023-07-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9537 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 29.77 98 0.997 15.5 11.4 70609
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.69 0.743
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.66 29.77 66913 3628 97.91 0.16109 0.15978 0.1724 0.18474 0.1973 RANDOM 16.778
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.6 -1.09 -0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.847 r_dihedral_angle_2_deg 11.264 r_dihedral_angle_1_deg 6.63 r_long_range_B_refined 4.91 r_long_range_B_other 4.808 r_scangle_other 3.911 r_scbond_it 2.736 r_scbond_other 2.736 r_mcangle_other 2.298 r_mcangle_it 2.293
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.847 r_dihedral_angle_2_deg 11.264 r_dihedral_angle_1_deg 6.63 r_long_range_B_refined 4.91 r_long_range_B_other 4.808 r_scangle_other 3.911 r_scbond_it 2.736 r_scbond_other 2.736 r_mcangle_other 2.298 r_mcangle_it 2.293 r_mcbond_it 1.654 r_mcbond_other 1.652 r_angle_refined_deg 1.643 r_angle_other_deg 0.619 r_chiral_restr 0.103 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4309 Nucleic Acid Atoms Solvent Atoms 437 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing