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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 11c/i
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 14% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.42 49.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.882 α = 90 b = 48.882 β = 90 c = 196.535 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 49.13 100 0.079 0.086 0.036 1 16.5 10.7 26384
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.84 100 1.487 1.631 0.666 0.666 1.6 11.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 42.369 26314 1386 99.973 0.206 0.2044 0.2039 0.2403 0.2363 36.472
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.375 -0.187 -0.375 1.216
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.028 r_dihedral_angle_6_deg 15.524 r_dihedral_angle_3_deg 13.22 r_dihedral_angle_1_deg 8.36 r_lrange_it 6.421 r_lrange_other 6.421 r_scangle_it 4.215 r_scangle_other 4.213 r_mcangle_it 3.352 r_mcangle_other 3.352
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.028 r_dihedral_angle_6_deg 15.524 r_dihedral_angle_3_deg 13.22 r_dihedral_angle_1_deg 8.36 r_lrange_it 6.421 r_lrange_other 6.421 r_scangle_it 4.215 r_scangle_other 4.213 r_mcangle_it 3.352 r_mcangle_other 3.352 r_scbond_it 2.971 r_scbond_other 2.969 r_mcbond_it 2.588 r_mcbond_other 2.585 r_angle_refined_deg 2.32 r_angle_other_deg 0.789 r_symmetry_xyhbond_nbd_refined 0.222 r_nbd_refined 0.212 r_nbd_other 0.211 r_symmetry_nbd_other 0.199 r_symmetry_nbd_refined 0.185 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.17 r_chiral_restr 0.122 r_ncsr_local_group_1 0.1 r_symmetry_nbtor_other 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1877 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing