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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12h/p
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 16% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.42 49.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.002 α = 90 b = 49.002 β = 90 c = 195.356 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 48.84 99.7 0.049 0.054 0.021 0.999 19.4 11.7 61054
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.35 1.37 95.3 1.452 1.623 0.707 0.616 1.4 9.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.35 42.473 60962 3053 99.68 0.179 0.1775 0.1872 0.2035 0.2081 25.473
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.106 -0.053 -0.106 0.345
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.094 r_lrange_it 19.282 r_lrange_other 18.595 r_dihedral_angle_6_deg 16.326 r_mcangle_other 14.006 r_mcangle_it 14.005 r_scangle_it 12.38 r_scangle_other 12.376 r_mcbond_it 11.145 r_mcbond_other 11.111
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.094 r_lrange_it 19.282 r_lrange_other 18.595 r_dihedral_angle_6_deg 16.326 r_mcangle_other 14.006 r_mcangle_it 14.005 r_scangle_it 12.38 r_scangle_other 12.376 r_mcbond_it 11.145 r_mcbond_other 11.111 r_dihedral_angle_3_deg 10.552 r_scbond_it 8.713 r_scbond_other 8.709 r_dihedral_angle_1_deg 7.819 r_rigid_bond_restr 4.682 r_angle_refined_deg 1.77 r_angle_other_deg 0.611 r_symmetry_xyhbond_nbd_refined 0.27 r_nbd_refined 0.213 r_symmetry_nbd_other 0.203 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.165 r_nbd_other 0.156 r_symmetry_nbd_refined 0.111 r_ncsr_local_group_1 0.105 r_chiral_restr 0.098 r_symmetry_nbtor_other 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1879 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing