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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12c/k
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 12% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.4 48.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.924 α = 90 b = 48.924 β = 90 c = 194.888 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 48.72 100 0.117 0.127 0.051 0.999 12.2 11.4 19295
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.05 100 1.3 1.412 0.55 0.74 2 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 42.405 19232 1018 99.964 0.223 0.2205 0.2196 0.2749 0.2716 39.925
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.705 -0.352 -0.705 2.286
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.493 r_dihedral_angle_6_deg 14.865 r_dihedral_angle_3_deg 12.162 r_dihedral_angle_1_deg 8.562 r_lrange_other 6.156 r_lrange_it 6.148 r_scangle_it 3.878 r_scangle_other 3.876 r_mcangle_it 3.573 r_mcangle_other 3.572
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.493 r_dihedral_angle_6_deg 14.865 r_dihedral_angle_3_deg 12.162 r_dihedral_angle_1_deg 8.562 r_lrange_other 6.156 r_lrange_it 6.148 r_scangle_it 3.878 r_scangle_other 3.876 r_mcangle_it 3.573 r_mcangle_other 3.572 r_scbond_it 2.707 r_scbond_other 2.705 r_mcbond_it 2.54 r_mcbond_other 2.534 r_angle_refined_deg 1.795 r_angle_other_deg 0.615 r_symmetry_xyhbond_nbd_refined 0.262 r_nbd_refined 0.203 r_symmetry_nbd_other 0.195 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.171 r_symmetry_nbd_refined 0.156 r_nbd_other 0.136 r_ncsr_local_group_1 0.112 r_symmetry_nbtor_other 0.09 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1821 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing