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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12g/j
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.29 46.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.589 α = 90 b = 48.797 β = 111.259 c = 99.904 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 46.55 98.5 0.052 0.065 0.038 0.999 12.9 5.3 60091
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.53 96.8 1.573 1.939 1.119 0.666 1.1 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 46.55 60088 3029 98.455 0.177 0.1748 0.18 0.22 0.2188 20.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.969 -2.037 -0.471 0.835
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.504 r_lrange_it 15.647 r_lrange_other 15.097 r_dihedral_angle_6_deg 14.366 r_dihedral_angle_3_deg 12.142 r_scangle_it 10.642 r_scangle_other 10.64 r_mcangle_other 10.615 r_mcangle_it 10.61 r_dihedral_angle_1_deg 7.974
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.504 r_lrange_it 15.647 r_lrange_other 15.097 r_dihedral_angle_6_deg 14.366 r_dihedral_angle_3_deg 12.142 r_scangle_it 10.642 r_scangle_other 10.64 r_mcangle_other 10.615 r_mcangle_it 10.61 r_dihedral_angle_1_deg 7.974 r_scbond_it 7.387 r_scbond_other 7.385 r_mcbond_it 7.205 r_mcbond_other 7.196 r_rigid_bond_restr 5.026 r_angle_refined_deg 1.658 r_angle_other_deg 0.557 r_nbd_refined 0.207 r_symmetry_nbd_other 0.2 r_nbd_other 0.181 r_nbtor_refined 0.178 r_symmetry_nbd_refined 0.16 r_xyhbond_nbd_refined 0.138 r_symmetry_xyhbond_nbd_refined 0.105 r_symmetry_nbtor_other 0.091 r_chiral_restr 0.083 r_ncsr_local_group_2 0.082 r_ncsr_local_group_3 0.08 r_ncsr_local_group_1 0.077 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2825 Nucleic Acid Atoms Solvent Atoms 295 Heterogen Atoms 135
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing