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StmPr1, Stenotrophomonas maltophilia Protease 1, 36 kDa alkine serine protease in complex with PMSF
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Solved with the model 9G8V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 293.15 0.9 M Ammonium sulfate
0.4 M Lithium sulfate
0.1 M Sodium acetate
Crystal Properties Matthews coefficient Solvent content 2.33 47.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.902 α = 90 b = 85.747 β = 90 c = 130.747 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2019-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.0332 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.89 49.154 99.7 0.113 0.121 0.045 0.999 11.6 7.2 54075
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 2.03 99.7 0.412 0.446 0.169 0.96 4.9 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.89 49.154 27330 1062 99.843 0.177 0.1747 0.2354 0.2185 RANDOM 28.394
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.718 3.997 -2.279
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.591 r_dihedral_angle_6_deg 13.357 r_dihedral_angle_1_deg 7.04 r_lrange_it 5.97 r_dihedral_angle_2_deg 5.69 r_scangle_it 4.636 r_scbond_it 3.44 r_mcangle_it 3.231 r_mcbond_it 2.417 r_angle_refined_deg 1.718
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.591 r_dihedral_angle_6_deg 13.357 r_dihedral_angle_1_deg 7.04 r_lrange_it 5.97 r_dihedral_angle_2_deg 5.69 r_scangle_it 4.636 r_scbond_it 3.44 r_mcangle_it 3.231 r_mcbond_it 2.417 r_angle_refined_deg 1.718 r_nbtor_refined 0.31 r_nbd_refined 0.224 r_xyhbond_nbd_refined 0.189 r_metal_ion_refined 0.155 r_symmetry_nbd_refined 0.143 r_symmetry_xyhbond_nbd_refined 0.115 r_chiral_restr 0.111 r_gen_planes_refined 0.009 r_bond_refined_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2528 Nucleic Acid Atoms Solvent Atoms 320 Heterogen Atoms 55
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling PHASER phasing