☰ Navigation Tabs
Crystal structure of Arabidopsis thaliana Acyl-ACP Thioesterase (At-FatA) complexed with Oxaziclomefone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2OWN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 1.6M Ammonium sulphate, 0.1M sodium acetate pH 4.8
Crystal Properties Matthews coefficient Solvent content 2.21 44.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.154 α = 90 b = 97.839 β = 90 c = 126.318 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD ONYX CCD 2015-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OTHER 1.54184
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 20.42 99.7 0.997 11.4 4.2 47041
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 98.7 0.709 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.9 20.42 46906 2336 99.308 0.238 0.2361 0.2425 0.2716 0.2721 27.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 -2.187 1.907
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.853 r_dihedral_angle_4_deg 16.044 r_dihedral_angle_3_deg 14.441 r_dihedral_angle_1_deg 6.665 r_lrange_it 6.486 r_lrange_other 6.485 r_scangle_it 4.689 r_scangle_other 4.688 r_mcangle_it 3.311 r_mcangle_other 3.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.853 r_dihedral_angle_4_deg 16.044 r_dihedral_angle_3_deg 14.441 r_dihedral_angle_1_deg 6.665 r_lrange_it 6.486 r_lrange_other 6.485 r_scangle_it 4.689 r_scangle_other 4.688 r_mcangle_it 3.311 r_mcangle_other 3.31 r_scbond_it 3.018 r_scbond_other 3.018 r_angle_other_deg 2.299 r_mcbond_it 2.231 r_mcbond_other 2.228 r_angle_refined_deg 1.52 r_nbd_other 0.232 r_symmetry_nbd_other 0.214 r_nbd_refined 0.205 r_symmetry_nbd_refined 0.184 r_nbtor_refined 0.163 r_xyhbond_nbd_refined 0.148 r_symmetry_xyhbond_nbd_refined 0.1 r_ncsr_local_group_1 0.09 r_symmetry_xyhbond_nbd_other 0.079 r_symmetry_nbtor_other 0.074 r_chiral_restr 0.07 r_bond_other_d 0.035 r_gen_planes_other 0.011 r_bond_refined_d 0.009 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4151 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling MOLREP phasing