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Crystal structure of Se-Met CTB10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 18% isopropanol, 0.1 M sodium citrate tribasic dehydrate pH 5.5, 24%(W/V) PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.09 41.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.89 α = 90 b = 87.74 β = 116.81 c = 85.88 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2018-12-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U1 0.97918 SSRF BL17U1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 57.72 98.61 0.092 0.099 0.037 0.998 17.43 6.8 47668
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 0.9163 0.9887 0.3681 0.803 2.41 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 57.72 45193 2474 98.62 0.19401 0.19072 0.195 0.25614 0.2606 RANDOM 55.754
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.63 -0.57 -0.88 -1.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.849 r_long_range_B_refined 9.767 r_long_range_B_other 9.767 r_scangle_other 7.973 r_dihedral_angle_1_deg 7.787 r_mcangle_it 7.025 r_mcangle_other 7.024 r_dihedral_angle_2_deg 6.079 r_scbond_it 5.713 r_scbond_other 5.713
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.849 r_long_range_B_refined 9.767 r_long_range_B_other 9.767 r_scangle_other 7.973 r_dihedral_angle_1_deg 7.787 r_mcangle_it 7.025 r_mcangle_other 7.024 r_dihedral_angle_2_deg 6.079 r_scbond_it 5.713 r_scbond_other 5.713 r_mcbond_it 5.113 r_mcbond_other 5.112 r_angle_refined_deg 1.608 r_angle_other_deg 0.531 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8103 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Aimless data scaling xia2 data reduction PHASER phasing