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Coprinopsis cinerea GH131 protein CcGH131B E161A in complex with cellobiose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3W9A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 PEG 8000, ammonium phosphate, MES-NaOH
Crystal Properties Matthews coefficient Solvent content 2.39 48.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.66 α = 90 b = 71.66 β = 90 c = 226.521 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2017-11-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A 1.0 Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 48 99.7 0.087 0.026 16.9 12.4 115588
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 99.1 0.497 0.146 4.7 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 35.83 109564 5926 99.62 0.15993 0.15873 0.1627 0.18185 0.1856 RANDOM 15.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.066 r_dihedral_angle_1_deg 7.702 r_long_range_B_refined 5.07 r_long_range_B_other 4.707 r_dihedral_angle_2_deg 4.657 r_scangle_other 2.993 r_mcangle_it 2.353 r_mcangle_other 2.353 r_scbond_it 1.837 r_scbond_other 1.837
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.066 r_dihedral_angle_1_deg 7.702 r_long_range_B_refined 5.07 r_long_range_B_other 4.707 r_dihedral_angle_2_deg 4.657 r_scangle_other 2.993 r_mcangle_it 2.353 r_mcangle_other 2.353 r_scbond_it 1.837 r_scbond_other 1.837 r_mcbond_it 1.446 r_mcbond_other 1.441 r_angle_refined_deg 1.38 r_angle_other_deg 0.763 r_chiral_restr 0.07 r_gen_planes_other 0.012 r_gen_planes_refined 0.009 r_bond_refined_d 0.006 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4790 Nucleic Acid Atoms Solvent Atoms 911 Heterogen Atoms 87
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction Aimless data scaling MOLREP phasing