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ChiLob 7/4 hIgG1 HC-K219C F(ab')2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6FAX
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 294.15 Morpheus B4: 12.5% w/v PEG1000, 12.5% w/v PEG3350, 12.5% v/v MPD, 0.03 M of each halide, 0.1 M MES/imidazole pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.43 49.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.434 α = 90 b = 132.637 β = 90 c = 162.968 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 45 PIXEL DECTRIS PILATUS 12M 2024-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I23 2.7552 Diamond I23
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.49 81.62 91.1 0.241 0.051 0.998 10 23.1 11753
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.491 3.605 3.072 0.636 0.461 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.491 81.617 11753 581 91.052 0.21 0.2065 0.2149 0.2707 0.2775 113.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -7.012 3.701 3.311
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 18.626 r_lrange_other 18.625 r_dihedral_angle_3_deg 14.159 r_scangle_it 13.015 r_scangle_other 13.014 r_dihedral_angle_6_deg 12.025 r_mcangle_it 11.418 r_mcangle_other 11.417 r_scbond_it 8.222 r_scbond_other 8.221
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 18.626 r_lrange_other 18.625 r_dihedral_angle_3_deg 14.159 r_scangle_it 13.015 r_scangle_other 13.014 r_dihedral_angle_6_deg 12.025 r_mcangle_it 11.418 r_mcangle_other 11.417 r_scbond_it 8.222 r_scbond_other 8.221 r_dihedral_angle_1_deg 8.143 r_mcbond_it 7.207 r_mcbond_other 7.197 r_dihedral_angle_2_deg 4.395 r_angle_refined_deg 1.183 r_symmetry_xyhbond_nbd_refined 0.754 r_angle_other_deg 0.412 r_nbd_other 0.229 r_nbd_refined 0.202 r_symmetry_nbd_other 0.198 r_nbtor_refined 0.176 r_xyhbond_nbd_refined 0.157 r_ncsr_local_group_2 0.132 r_symmetry_nbd_refined 0.124 r_ncsr_local_group_1 0.115 r_symmetry_nbtor_other 0.083 r_chiral_restr 0.056 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6404 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose XDS data reduction Aimless data scaling autoPROC data scaling STARANISO data scaling PHASER phasing REFMAC refinement PDB-REDO refinement MolProbity model building Coot model building