9T1X | pdb_00009t1x

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	5JQK

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.5	289.15	0.1 M HEPES, pH 7.5, 25% v/v PEG smear medium (12.5% w/v PEG 3350, 12.5% w/v PEG 4000, 12.5% w/v PEG 2000, 12.5% w/v PEG 5000 MME)

Crystal Properties
Matthews coefficient	Solvent content
2.18	43.67

Symmetry
Space Group	C 1 2 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS3 6M		2021-07-03	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I24	0.97950	Diamond	I24

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.55	98.57	100	0.999	10.1	14.2		43296

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.55	2.65			0.525

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2.55	98.568	43277	2111	99.956	0.222	0.2207	0.2221	0.2472	0.2278	RANDOM	80.95

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-5.451		-1.467	3.503		2.394

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	13.296
r_dihedral_angle_6_deg	13.019
r_dihedral_angle_1_deg	6.231
r_dihedral_angle_2_deg	6.081
r_lrange_it	5.376
r_lrange_other	5.376
r_scangle_it	3.549
r_scangle_other	3.549
r_mcangle_it	3.37
r_mcangle_other	3.37

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_3_deg	13.296
r_dihedral_angle_6_deg	13.019
r_dihedral_angle_1_deg	6.231
r_dihedral_angle_2_deg	6.081
r_lrange_it	5.376
r_lrange_other	5.376
r_scangle_it	3.549
r_scangle_other	3.549
r_mcangle_it	3.37
r_mcangle_other	3.37
r_scbond_it	2.137
r_scbond_other	2.131
r_mcbond_it	2.004
r_mcbond_other	2.004
r_angle_refined_deg	1.051
r_dihedral_angle_other_2_deg	0.651
r_angle_other_deg	0.384
r_symmetry_xyhbond_nbd_refined	0.25
r_symmetry_nbd_refined	0.238
r_nbd_other	0.191
r_nbd_refined	0.19
r_symmetry_nbd_other	0.185
r_nbtor_refined	0.174
r_xyhbond_nbd_refined	0.154
r_ncsr_local_group_1	0.121
r_symmetry_nbtor_other	0.077
r_symmetry_xyhbond_nbd_other	0.056
r_chiral_restr	0.051
r_bond_refined_d	0.008
r_gen_planes_refined	0.003
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	10187
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	80

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.