☰ Navigation Tabs
Crystal structure of leaf branch compost cutinase quintuple variant ICCG L50Y
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6THT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 293 10 mM Tris, 150 mM NaCl, 0.6 M succinic acid, pH 7.0
Crystal Properties Matthews coefficient Solvent content 3.12 60.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.65 α = 90 b = 96.65 β = 90 c = 73.71 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, DESY BEAMLINE P11 1.000 PETRA III, DESY P11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.51 48.56 100 1 25.82 19.88 1098150
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.51 1.6 0.678
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.51 48.325 55242 2763 99.987 0.151 0.1494 0.1941 0.1836 0.1919 33.521
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.121 1.121 -2.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.274 r_lrange_it 15.378 r_scangle_it 11.835 r_dihedral_angle_3_deg 10.787 r_scbond_it 9.363 r_mcangle_it 8.809 r_dihedral_angle_2_deg 8.004 r_dihedral_angle_1_deg 6.635 r_mcbond_it 6.625 r_rigid_bond_restr 5.078
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.274 r_lrange_it 15.378 r_scangle_it 11.835 r_dihedral_angle_3_deg 10.787 r_scbond_it 9.363 r_mcangle_it 8.809 r_dihedral_angle_2_deg 8.004 r_dihedral_angle_1_deg 6.635 r_mcbond_it 6.625 r_rigid_bond_restr 5.078 r_angle_refined_deg 1.59 r_nbtor_refined 0.309 r_nbd_refined 0.211 r_symmetry_nbd_refined 0.206 r_symmetry_xyhbond_nbd_refined 0.12 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.105 r_bond_refined_d 0.01 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1943 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing