GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 1KV3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
1KV3_GDP_B_701 | 78% | 40% | 0.136 | 0.979 | 1.51 | 0.84 | 4 | 1 | 0 | 0 | 100% | 1 |
1KV3_GDP_D_703 | 76% | 41% | 0.141 | 0.979 | 1.45 | 0.86 | 4 | 2 | 0 | 0 | 100% | 1 |
1KV3_GDP_F_705 | 76% | 40% | 0.142 | 0.98 | 1.54 | 0.82 | 5 | - | 0 | 0 | 100% | 1 |
1KV3_GDP_A_700 | 74% | 42% | 0.148 | 0.98 | 1.47 | 0.82 | 6 | 1 | 0 | 0 | 100% | 1 |
1KV3_GDP_E_704 | 74% | 42% | 0.144 | 0.975 | 1.41 | 0.86 | 3 | 1 | 0 | 0 | 100% | 1 |
1KV3_GDP_C_702 | 72% | 37% | 0.155 | 0.979 | 1.62 | 0.87 | 6 | 1 | 0 | 0 | 100% | 1 |
6KZB_GDP_C_703 | 31% | 41% | 0.226 | 0.897 | 0.93 | 1.35 | 1 | 6 | 1 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
8V3A_GDP_B_201 | 100% | 42% | 0.036 | 0.991 | 1.1 | 1.14 | 1 | 2 | 0 | 0 | 100% | 1 |