D5M: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE

D5M is a Ligand Of Interest in 1LGN designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1LGN_D5M_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1LGN_D5M_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
1LGN_D5M_A_401 61% 47% 0.157 0.9450.98 1.06 2 200100%1
1LGN_D5M_E_401 56% 52% 0.173 0.9470.82 1.04 1 220100%1
1LGN_D5M_B_401 52% 47% 0.189 0.9470.97 1.06 1 200100%1
1LGN_D5M_D_401 43% 40% 0.215 0.9411.06 1.29 2 420100%1
1LGN_D5M_C_401 41% 46% 0.208 0.9220.99 1.1 1 200100%1
6B42_D5M_A_201 98% 52% 0.066 0.9860.82 1.04 1 200100%1
8HCG_D5M_A_306 95% 32% 0.078 0.9821.69 1.02 7 100100%1
8PUU_D5M_B_301 92% 4% 0.076 0.9684.14 1.46 8 200100%1
6JNL_D5M_C_101 89% 60% 0.09 0.9770.72 0.82 - 10095%1
2IOC_D5M_B_303 88% 11% 0.07 0.9452.81 1.38 2 120100%1