PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 1M54 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
1M54_PLP_F_1610 | 84% | 36% | 0.117 | 0.981 | 1.37 | 1.14 | 4 | 1 | 4 | 0 | 100% | 0.9375 |
1M54_PLP_A_1110 | 70% | 32% | 0.144 | 0.961 | 1.52 | 1.18 | 3 | 2 | 3 | 0 | 100% | 0.9375 |
1M54_PLP_C_1310 | 70% | 30% | 0.149 | 0.966 | 1.55 | 1.25 | 4 | 2 | 5 | 0 | 100% | 0.9375 |
1M54_PLP_B_1210 | 65% | 7% | 0.159 | 0.963 | 2.51 | 2.24 | 6 | 8 | 1 | 0 | 100% | 0.9375 |
1M54_PLP_D_1410 | 65% | 26% | 0.16 | 0.963 | 1.62 | 1.41 | 4 | 3 | 6 | 0 | 100% | 0.9375 |
1M54_PLP_E_1510 | 60% | 27% | 0.171 | 0.956 | 1.64 | 1.33 | 4 | 3 | 5 | 0 | 100% | 0.9375 |
8STW_PLP_E_501 | 89% | 60% | 0.107 | 0.985 | 0.79 | 0.75 | 1 | 1 | 0 | 0 | 100% | 0.9375 |
5MMS_PLP_D_1002 | 79% | 55% | 0.131 | 0.977 | 0.91 | 0.85 | 1 | - | 0 | 0 | 100% | 0.9375 |
1JBQ_PLP_A_1001 | 73% | 38% | 0.137 | 0.965 | 1.29 | 1.16 | 2 | 1 | 1 | 0 | 100% | 0.9375 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
9J0V_PLP_A_301 | 100% | 36% | 0.037 | 0.987 | 0.82 | 1.68 | - | 5 | 0 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |