GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 1XTQ designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1XTQ_GDP_A_201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1XTQ_GDP_A_201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter1XTQ_GDP_A_201Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
1XTQ_GDP_A_201 76% 43% 0.114 0.9491.25 0.96 2 100100%1
6BSX_GDP_A_203 96% 26% 0.069 0.9761.71 1.31 6 300100%1
3SEA_GDP_A_201 93% 45% 0.088 0.9820.94 1.18 1 300100%1
3T5G_GDP_A_201 91% 52% 0.087 0.9730.87 0.98 1 300100%1
7BTC_GDP_C_201 90% 38% 0.102 0.9840.82 1.58 - 600100%1
5YXH_GDP_A_201 84% 44% 0.107 0.9690.97 1.17 1 300100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1
4LUC_GDP_A_204 100% 40% 0.036 0.9921.22 1.11 2 200100%1
5YMX_GDP_A_301 100% 54% 0.038 0.9940.92 0.85 1 -20100%1