GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 2GJ8 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2GJ8_GDP_C_652Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2GJ8_GDP_C_652Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2GJ8_GDP_C_652Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2GJ8_GDP_C_652 100% 36% 0.041 0.9841.13 1.36 1 300100%1
2GJ8_GDP_A_650 99% 43% 0.05 0.9781.05 1.15 1 200100%1
2GJ8_GDP_D_653 98% 39% 0.057 0.9760.96 1.42 - 310100%1
2GJ8_GDP_B_651 85% 34% 0.087 0.9531.24 1.37 2 400100%1
2GJA_GDP_A_400 98% 48% 0.065 0.9850.88 1.12 1 400100%1
2GJ9_GDP_A_400 92% 39% 0.087 0.9791.13 1.25 2 300100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1
4LUC_GDP_A_204 100% 40% 0.036 0.9921.22 1.11 2 200100%1
5YMX_GDP_A_301 100% 54% 0.038 0.9940.92 0.85 1 -20100%1