GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 2IF0 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2IF0_GDP_A_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2IF0_GDP_A_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2IF0_GDP_A_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2IF0_GDP_A_501 76% 46% 0.13 0.9660.91 1.16 1 310100%1
2IF0_GDP_B_1501 67% 44% 0.159 0.9670.97 1.17 1 400100%1
2IEY_GDP_A_200 89% 47% 0.067 0.9470.95 1.11 1 210100%1
2IEZ_GDP_I_3001 74% 39% 0.142 0.9731.01 1.37 1 500100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1
2CXX_GDP_B_2401 100% 29% 0.031 0.9891.26 1.57 1 300100%1
4LUC_GDP_A_204 100% 40% 0.036 0.9921.22 1.11 2 200100%1
5YMX_GDP_A_301 100% 54% 0.038 0.9940.92 0.85 1 -20100%1