VDM: (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL

VDM is a Ligand Of Interest in 2JF4 designated by the RCSB


Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2JF4_VDM_A_1548 73% 37% 0.146 0.9730.8 1.67 - 410100%1
5HVL_VDM_B_502 83% 11% 0.086 0.9451.87 2.29 3 500100%1
5Z66_VDM_A_609 82% 31% 0.106 0.960.98 1.73 2 210100%1
5HVO_VDM_C_502 68% 7% 0.117 0.9281.96 2.75 5 820100%1
5HVM_VDM_A_602 59% 6% 0.152 0.9341.84 3.28 4 1020100%1