2NMP | pdb_00002nmp


PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 2NMP designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2NMP_PLP_C_500Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2NMP_PLP_C_500Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2NMP_PLP_C_500Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2NMP_PLP_C_500 82% 34% 0.123 0.981.2 1.4 1 220100%1
2NMP_PLP_A_500 68% 30% 0.145 0.9571.56 1.23 2 220100%1
2NMP_PLP_D_500 62% 33% 0.171 0.9631.21 1.42 2 380100%1
3COG_PLP_C_500 95% 38% 0.076 0.9821.15 1.29 2 100100%1
3CEJ_PLP_A_832 100% 41% 0.021 0.9981.23 1.05 1 280100%1
3CEM_PLP_A_832 100% 41% 0.021 0.9971.24 1.04 2 210100%1
4PPM_PLP_A_902 100% 7% 0.019 0.9982.88 1.91 9 600100%1
1EKV_PLP_A_370 100% 19% 0.019 0.9982 1.45 5 41094%1
3WQC_PLP_B_402 100% 21% 0.026 0.9961.96 1.38 4 400100%1