Ligand validation:2PMD

PPV: PYROPHOSPHATE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2PMD_PPV_A_418	95%	19%	0.068	0.983	2.51	0.89	2	-	1	0	100%	0.98
2PMD_PPV_A_420	95%	19%	0.069	0.984	2.48	0.92	2	-	0	0	100%	0.98
2PMD_PPV_B_417	95%	19%	0.073	0.986	2.48	0.91	2	-	0	0	100%	0.98
2PMD_PPV_B_419	94%	19%	0.077	0.984	2.47	0.91	2	-	0	0	100%	1
2PMD_PPV_B_418	89%	19%	0.091	0.976	2.54	0.89	2	-	0	0	100%	1
2PMD_PPV_A_419	76%	19%	0.125	0.967	2.5	0.9	2	-	0	0	100%	1
3JYY_PPV_B_738	100%	48%	0.019	0.998	0.77	1.11	-	1	0	0	100%	1
8YLA_PPV_B_404	100%	59%	0.022	0.996	0.72	0.71	-	-	0	0	100%	1
8H4P_PPV_A_401	100%	53%	0.031	0.993	0.89	0.82	-	-	0	0	100%	1
4OKM_PPV_B_904	100%	51%	0.032	0.993	0.72	1.03	-	1	0	0	100%	1
5TXZ_PPV_A_514	100%	44%	0.036	0.993	0.73	1.31	-	2	0	0	100%	0.36

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.