KDM: deamino-alpha-neuraminic acid
KDM is a Ligand Of Interest in 2XZI designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 2XZI_KDM_B_500 | 92% | 22% | 0.061 | 0.959 | 1.54 | 1.59 | 4 | 4 | 0 | 0 | 100% | 1 |
| 2XZI_KDM_A_500 | 83% | 22% | 0.075 | 0.938 | 1.5 | 1.63 | 4 | 4 | 0 | 0 | 100% | 1 |
| 2XZI_KDM_B_501 | 75% | 31% | 0.09 | 0.924 | 1.57 | 1.1 | 4 | 1 | 0 | 0 | 100% | 1 |
| 2XZI_KDM_A_501 | 38% | 35% | 0.127 | 0.825 | 1.42 | 1.07 | 3 | 1 | 0 | 0 | 100% | 1 |
| 7P1Q_KDM_A_501 | 100% | 37% | 0.032 | 0.992 | 1.04 | 1.31 | 2 | 3 | 0 | 0 | 100% | 1 |
| 7P1U_KDM_A_501 | 85% | 35% | 0.081 | 0.953 | 0.9 | 1.55 | 1 | 5 | 0 | 0 | 100% | 0.8 |
| 7P1D_KDM_A_501 | 73% | 15% | 0.084 | 0.911 | 2.33 | 1.4 | 4 | 3 | 0 | 0 | 100% | 1 |
| 7P1O_KDM_X_502 | 56% | 16% | 0.113 | 0.884 | 1.52 | 2.05 | 3 | 5 | 1 | 0 | 100% | 1 |