Ligand validation:2YDV

SOG: octyl 1-thio-beta-D-glucopyranoside

SOG is a Ligand Of Interest in 2YDV designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2YDV_SOG_A_501	44%	57%	0.156	0.882	0.81	0.83	1	-	3	0	100%	1
2YDV_SOG_A_502	5%	53%	0.353	0.756	0.89	0.91	1	2	0	0	100%	1
2YDV_SOG_A_505	1%	56%	0.382	0.553	0.82	0.88	1	1	0	0	100%	1
2YDV_SOG_A_503	1%	50%	0.429	0.571	0.91	1	1	1	0	0	100%	1
2YDV_SOG_A_504	0%	53%	0.551	0.577	0.93	0.88	1	1	2	0	100%	1
5G53_SOG_A_501	54%	39%	0.17	0.937	1.01	1.37	1	3	0	0	100%	1
2YDO_SOG_A_501	7%	54%	0.378	0.844	0.88	0.9	1	1	0	0	100%	1
6TOS_SOG_B_406	70%	81%	0.109	0.927	0.31	0.51	-	-	0	0	100%	1
2VT4_SOG_A_403	67%	60%	0.141	0.95	0.59	0.92	-	-	0	0	100%	1
6YU6_SOG_A_507	64%	91%	0.138	0.937	0.18	0.39	-	-	3	0	100%	1
6TOT_SOG_A_405	55%	44%	0.159	0.929	0.91	1.24	1	1	0	0	100%	1
3VHZ_SOG_A_430	53%	27%	0.144	0.906	1.73	1.21	5	2	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.