PLP: PYRIDOXAL-5'-PHOSPHATE
PLP is a Ligand Of Interest in 2YHK designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
2YHK_PLP_A_1257 | 97% | 22% | 0.068 | 0.982 | 1.9 | 1.37 | 3 | 4 | 0 | 0 | 100% | 0.9375 |
2YHK_PLP_B_1257 | 94% | 18% | 0.078 | 0.977 | 1.95 | 1.6 | 4 | 4 | 1 | 0 | 100% | 0.9375 |
2YCT_PLP_A_1257 | 98% | 19% | 0.065 | 0.989 | 1.82 | 1.62 | 3 | 4 | 0 | 0 | 100% | 0.4688 |
7TDL_PLP_D_502 | 95% | 20% | 0.081 | 0.985 | 2.22 | 1.16 | 5 | 1 | 2 | 0 | 100% | 0.9375 |
7TCS_PLP_D_502 | 91% | 10% | 0.097 | 0.982 | 2.17 | 2.14 | 4 | 5 | 1 | 0 | 100% | 0.9375 |
2VLH_PLP_B_1257 | 86% | 16% | 0.112 | 0.98 | 1.91 | 1.77 | 2 | 4 | 2 | 0 | 100% | 0.9375 |
9J0V_PLP_A_301 | 100% | 36% | 0.037 | 0.987 | 0.82 | 1.68 | - | 5 | 0 | 0 | 100% | 0.9375 |
2BIE_PLP_B_1361 | 100% | 28% | 0.039 | 0.989 | 1.48 | 1.39 | 4 | 3 | 1 | 0 | 100% | 0.9375 |
4NOG_PLP_A_501 | 100% | 38% | 0.042 | 0.992 | 1.24 | 1.18 | 3 | 1 | 0 | 0 | 100% | 1 |
3WQC_PLP_B_402 | 100% | 21% | 0.045 | 0.993 | 1.96 | 1.38 | 4 | 4 | 0 | 0 | 100% | 0.9375 |
4HT3_PLP_B_401 | 100% | 15% | 0.045 | 0.993 | 2.04 | 1.72 | 3 | 5 | 0 | 0 | 100% | 0.9375 |