TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 2PA7 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2PA7_TYD_B_140 | 59% | 39% | 0.088 | 0.867 | 0.94 | 1.33 | 2 | 4 | 0 | 0 | 100% | 1 |
| 2PA7_TYD_A_141 | 10% | 30% | 0.201 | 0.714 | 1.27 | 1.43 | 1 | 6 | 0 | 0 | 100% | 1 |
| 2PAM_TYD_B_140 | 100% | 31% | 0.019 | 0.997 | 1.5 | 1.17 | 1 | 5 | 1 | 0 | 100% | 1 |
| 2PAE_TYD_B_140 | 84% | 23% | 0.091 | 0.96 | 1.23 | 1.83 | 2 | 7 | 7 | 0 | 100% | 1 |
| 2PAK_TYD_B_140 | 78% | 28% | 0.082 | 0.926 | 1.31 | 1.46 | 2 | 5 | 2 | 0 | 100% | 1 |
| 5TPU_TYD_A_200 | 100% | 21% | 0.022 | 0.995 | 1.32 | 1.86 | 3 | 14 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 100% | 21% | 0.036 | 0.99 | 1.41 | 1.81 | 4 | 7 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_A_377 | 100% | 22% | 0.035 | 0.989 | 1.32 | 1.78 | 3 | 9 | 0 | 0 | 100% | 1 |
| 1PN3_TYD_A_406 | 99% | 53% | 0.04 | 0.991 | 0.96 | 0.74 | 1 | 1 | 5 | 0 | 100% | 1 |
| 5WXK_TYD_A_401 | 99% | 20% | 0.037 | 0.987 | 1.33 | 1.94 | 3 | 6 | 0 | 0 | 100% | 1 |
