GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 2PMD designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2PMD_GDP_B_416 | 93% | 24% | 0.082 | 0.983 | 1.21 | 1.81 | 1 | 11 | 2 | 0 | 100% | 1 |
| 2PMD_GDP_A_416 | 90% | 22% | 0.086 | 0.977 | 1.31 | 1.82 | 1 | 11 | 6 | 0 | 100% | 1 |
| 3PEN_GDP_A_416 | 100% | 27% | 0.032 | 0.994 | 1.14 | 1.68 | 3 | 6 | 2 | 0 | 100% | 1 |
| 4RD0_GDP_A_501 | 100% | 26% | 0.034 | 0.99 | 1.09 | 1.8 | 2 | 8 | 0 | 0 | 100% | 1 |
| 6I5M_GDP_A_501 | 99% | 28% | 0.038 | 0.99 | 1.05 | 1.74 | 4 | 7 | 0 | 0 | 100% | 1 |
| 4RD6_GDP_A_501 | 99% | 28% | 0.04 | 0.986 | 1.12 | 1.63 | 4 | 6 | 0 | 0 | 100% | 1 |
| 4RD3_GDP_A_502 | 98% | 25% | 0.049 | 0.983 | 1.21 | 1.72 | 4 | 7 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_A_1001 | 100% | 24% | 0.014 | 0.998 | 1.16 | 1.84 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 5V9L_GDP_A_201 | 100% | 35% | 0.014 | 0.998 | 1.01 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_K_401 | 100% | 25% | 0.015 | 0.999 | 1.16 | 1.76 | 3 | 7 | 0 | 0 | 100% | 1 |
