TYD: THYMIDINE-5'-DIPHOSPHATE
TYD is a Ligand Of Interest in 3FBF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3FBF_TYD_A_138 | 92% | 19% | 0.062 | 0.957 | 1.46 | 1.86 | 6 | 7 | 5 | 0 | 100% | 1 |
| 3FBF_TYD_C_138 | 87% | 21% | 0.074 | 0.951 | 1.44 | 1.78 | 6 | 7 | 2 | 0 | 100% | 1 |
| 3FBF_TYD_D_138 | 81% | 19% | 0.079 | 0.935 | 1.46 | 1.86 | 7 | 7 | 0 | 0 | 100% | 1 |
| 3FBF_TYD_E_138 | 79% | 20% | 0.082 | 0.93 | 1.5 | 1.76 | 6 | 6 | 2 | 0 | 100% | 1 |
| 3FBF_TYD_F_138 | 73% | 21% | 0.091 | 0.921 | 1.38 | 1.79 | 5 | 7 | 3 | 0 | 100% | 1 |
| 3FBF_TYD_B_138 | 72% | 20% | 0.086 | 0.911 | 1.44 | 1.85 | 7 | 7 | 1 | 0 | 100% | 1 |
| 3EVW_TYD_C_138 | 90% | 18% | 0.072 | 0.961 | 1.46 | 1.92 | 5 | 9 | 4 | 0 | 100% | 1 |
| 2B8Q_TYD_C_162 | 87% | 18% | 0.079 | 0.955 | 1.31 | 2.08 | 3 | 11 | 4 | 0 | 100% | 1 |
| 3FBC_TYD_C_138 | 49% | 20% | 0.119 | 0.864 | 1.42 | 1.85 | 4 | 7 | 2 | 0 | 100% | 1 |
| 2PAM_TYD_B_140 | 100% | 31% | 0.019 | 0.997 | 1.5 | 1.17 | 1 | 5 | 1 | 0 | 100% | 1 |
| 5TPU_TYD_A_200 | 100% | 21% | 0.022 | 0.995 | 1.32 | 1.86 | 3 | 14 | 0 | 0 | 100% | 1 |
| 3EVO_TYD_A_160 | 100% | 21% | 0.036 | 0.99 | 1.41 | 1.81 | 4 | 7 | 0 | 0 | 100% | 1 |
| 3OTI_TYD_A_377 | 100% | 22% | 0.035 | 0.989 | 1.32 | 1.78 | 3 | 9 | 0 | 0 | 100% | 1 |
| 1PN3_TYD_A_406 | 99% | 53% | 0.04 | 0.991 | 0.96 | 0.74 | 1 | 1 | 5 | 0 | 100% | 1 |
