GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 3GP9 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 3GP9_GDP_B_138 | 25% | 24% | 0.183 | 0.825 | 1.15 | 1.81 | 2 | 7 | 2 | 0 | 100% | 0.64 |
| 3GP9_GDP_F_138 | 16% | 25% | 0.224 | 0.802 | 1.15 | 1.77 | 3 | 7 | 0 | 0 | 100% | 0.64 |
| 3GP9_GDP_A_138 | 13% | 26% | 0.211 | 0.761 | 1.14 | 1.76 | 3 | 7 | 2 | 0 | 100% | 0.64 |
| 3GP9_GDP_C_138 | 12% | 25% | 0.222 | 0.757 | 1.15 | 1.8 | 2 | 7 | 0 | 0 | 100% | 0.64 |
| 3GP9_GDP_E_138 | 11% | 25% | 0.233 | 0.762 | 1.16 | 1.76 | 3 | 6 | 0 | 0 | 100% | 0.64 |
| 3GP9_GDP_D_138 | 7% | 25% | 0.236 | 0.704 | 1.16 | 1.77 | 2 | 7 | 4 | 0 | 100% | 0.64 |
| 3FBE_GDP_D_138 | 19% | 24% | 0.139 | 0.738 | 1.21 | 1.76 | 2 | 6 | 8 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 32% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 2CNW_GDP_A_1001 | 100% | 24% | 0.014 | 0.998 | 1.16 | 1.84 | 3 | 9 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 26% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
| 5V9L_GDP_A_201 | 100% | 35% | 0.014 | 0.998 | 1.01 | 1.42 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6EG8_GDP_K_401 | 100% | 25% | 0.015 | 0.999 | 1.16 | 1.76 | 3 | 7 | 0 | 0 | 100% | 1 |