CDP: CYTIDINE-5'-DIPHOSPHATE
CDP is a Ligand Of Interest in 3GPA designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3GPA_CDP_C_201 | 96% | 55% | 0.059 | 0.975 | 0.88 | 0.74 | 2 | - | 1 | 0 | 100% | 1 |
| 3GPA_CDP_B_201 | 95% | 49% | 0.061 | 0.97 | 1.04 | 0.84 | 1 | - | 4 | 0 | 100% | 1 |
| 3GPA_CDP_E_201 | 94% | 52% | 0.064 | 0.969 | 0.95 | 0.78 | 1 | - | 1 | 0 | 100% | 1 |
| 3GPA_CDP_D_201 | 93% | 48% | 0.068 | 0.97 | 1.05 | 0.85 | 1 | 1 | 1 | 0 | 100% | 1 |
| 3GPA_CDP_A_201 | 90% | 43% | 0.072 | 0.962 | 0.88 | 1.23 | 1 | 4 | 8 | 0 | 100% | 1 |
| 3GPA_CDP_F_201 | 78% | 44% | 0.092 | 0.938 | 0.97 | 1.08 | 1 | 3 | 8 | 0 | 100% | 1 |
| 3EE3_CDP_C_162 | 95% | 40% | 0.054 | 0.967 | 1.26 | 0.97 | 2 | 2 | 1 | 0 | 100% | 1 |
| 4FKX_CDP_C_201 | 100% | 57% | 0.023 | 0.995 | 0.8 | 0.73 | - | - | 0 | 0 | 100% | 1 |
| 4WTK_CDP_A_605 | 100% | 43% | 0.03 | 0.996 | 0.96 | 1.13 | 2 | 4 | 0 | 0 | 100% | 1 |
| 2VBU_CDP_A_1133 | 99% | 43% | 0.039 | 0.988 | 0.88 | 1.22 | - | 3 | 0 | 0 | 100% | 1 |
| 6SDK_CDP_C_301 | 99% | 5% | 0.043 | 0.987 | 3.7 | 1.62 | 12 | 7 | 0 | 0 | 100% | 1 |
| 7O0N_CDP_A_301 | 98% | 9% | 0.047 | 0.984 | 3.46 | 1.06 | 17 | 1 | 0 | 0 | 100% | 1 |
