GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 3KKQ designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3KKQ_GDP_A_179 | 98% | 56% | 0.064 | 0.984 | 0.92 | 0.8 | 1 | - | 0 | 0 | 100% | 1 |
9C1A_GDP_A_202 | 100% | 42% | 0.043 | 0.984 | 0.98 | 1.26 | 2 | 4 | 0 | 0 | 100% | 1 |
1X1R_GDP_A_1179 | 95% | 46% | 0.078 | 0.983 | 1.14 | 0.97 | 1 | 1 | 0 | 0 | 100% | 1 |
9C1B_GDP_A_302 | 89% | 47% | 0.076 | 0.956 | 0.98 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |