UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3MJR designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3MJR_UDP_B_261 | 100% | 29% | 0.029 | 0.993 | 1.02 | 1.68 | 1 | 6 | 0 | 0 | 100% | 1 |
| 3MJR_UDP_A_261 | 99% | 32% | 0.037 | 0.99 | 0.94 | 1.63 | - | 4 | 2 | 0 | 100% | 1 |
| 3MJR_UDP_C_501 | 94% | 32% | 0.064 | 0.969 | 1.03 | 1.56 | 1 | 4 | 0 | 0 | 100% | 1 |
| 3MJR_UDP_D_261 | 89% | 30% | 0.066 | 0.951 | 1.02 | 1.65 | 1 | 6 | 1 | 0 | 100% | 1 |
| 2ZI6_UDP_A_4301 | 100% | 22% | 0.019 | 0.998 | 1.23 | 1.89 | 3 | 8 | 1 | 0 | 100% | 1 |
| 4Q1F_UDP_B_301 | 100% | 32% | 0.023 | 0.995 | 1 | 1.59 | - | 5 | 1 | 0 | 100% | 1 |
| 4JLN_UDP_B_302 | 100% | 29% | 0.024 | 0.996 | 1.19 | 1.54 | 2 | 5 | 1 | 0 | 100% | 1 |
| 4JLJ_UDP_B_303 | 100% | 26% | 0.025 | 0.996 | 1.28 | 1.63 | 4 | 5 | 1 | 0 | 100% | 1 |
| 4Q1C_UDP_B_302 | 100% | 26% | 0.024 | 0.995 | 1.15 | 1.72 | 4 | 6 | 2 | 0 | 100% | 1 |
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
