DGJ: (2R,3S,4R,5S)-2-(hydroxymethyl)piperidine-3,4,5-triol
DGJ is a Ligand Of Interest in 3THD designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
| 3THD_DGJ_D_900 | 100% | 9% | 0.018 | 0.996 | 1.2 | 3.1 | 1 | 6 | 1 | 0 | 100% | 1 |
| 3THD_DGJ_A_900 | 100% | 10% | 0.023 | 0.995 | 1.28 | 2.81 | 2 | 6 | 0 | 0 | 100% | 1 |
| 3THD_DGJ_B_900 | 100% | 8% | 0.023 | 0.995 | 1.78 | 2.64 | 3 | 5 | 0 | 0 | 100% | 1 |
| 3THD_DGJ_C_900 | 100% | 15% | 0.024 | 0.995 | 1.67 | 2.01 | 3 | 7 | 0 | 0 | 100% | 1 |
| 4DO5_DGJ_A_509 | 99% | 55% | 0.035 | 0.986 | 0.26 | 1.28 | - | 2 | 0 | 0 | 100% | 1 |
| 4CU8_DGJ_A_1985 | 99% | 37% | 0.039 | 0.987 | 1.27 | 1.12 | 1 | 1 | 1 | 0 | 100% | 1 |
| 4D1J_DGJ_A_600 | 99% | 47% | 0.039 | 0.984 | 0.89 | 1.04 | 1 | - | 0 | 0 | 100% | 1 |
| 4UFM_DGJ_A_1001 | 95% | 78% | 0.058 | 0.969 | 0.16 | 0.64 | - | - | 0 | 0 | 100% | 1 |
| 3S5Y_DGJ_A_801 | 94% | 37% | 0.061 | 0.966 | 0.78 | 1.58 | - | 1 | 0 | 0 | 100% | 1 |