PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 3VSC designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3VSC_PLP_B_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3VSC_PLP_B_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3VSC_PLP_B_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3VSC_PLP_B_401 78% 5% 0.132 0.9882.22 3.09 5 110094%1
3VSC_PLP_A_401 76% 8% 0.118 0.9651.42 3.21 3 91094%1
5B36_PLP_B_401 97% 5% 0.065 0.9831.85 3.35 5 930100%1
3VSA_PLP_B_400 96% 5% 0.074 0.9862.11 3.19 2 900100%1
3VSD_PLP_B_401 85% 21% 0.099 0.9761.53 1.8 2 55094%1
1WKV_PLP_B_400 75% 4% 0.14 0.9743.52 2.05 7 520100%1
1EKV_PLP_A_370 100% 19% 0.019 0.9982 1.45 5 41094%1
2BIE_PLP_B_1361 100% 28% 0.039 0.9891.48 1.39 4 310100%1
4NOG_PLP_A_501 100% 38% 0.042 0.9921.24 1.18 3 100100%1
3WQC_PLP_B_402 100% 21% 0.045 0.9931.96 1.38 4 400100%1
4HT3_PLP_B_401 100% 15% 0.045 0.9932.04 1.72 3 500100%1