4D0M | pdb_00004d0m


GSP: 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE

GSP is a Ligand Of Interest in 4D0M designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4D0M_GSP_X_2000Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4D0M_GSP_X_2000Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter4D0M_GSP_X_2000Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
4D0M_GSP_X_2000 80% 28% 0.122 0.9711.38 1.52 5 600100%1
4D0M_GSP_N_2000 80% 31% 0.126 0.9741.24 1.5 4 500100%1
4D0M_GSP_T_2000 77% 32% 0.132 0.9711.2 1.47 3 600100%1
4D0M_GSP_R_2000 74% 33% 0.121 0.9511.23 1.4 2 500100%1
4D0M_GSP_P_2000 70% 30% 0.142 0.9591.28 1.49 4 600100%1
4D0M_GSP_h_2000 67% 26% 0.136 0.9441.47 1.52 5 500100%1
4D0M_GSP_D_2000 58% 29% 0.169 0.9471.37 1.47 5 600100%1
4D0M_GSP_H_2000 52% 31% 0.179 0.9361.29 1.44 3 600100%1
4D0M_GSP_J_2000 51% 28% 0.177 0.9331.43 1.45 3 400100%1
4D0M_GSP_Z_2000 51% 31% 0.18 0.9341.36 1.37 5 500100%1
4D0M_GSP_B_2000 44% 28% 0.198 0.9271.42 1.48 3 400100%1
4D0M_GSP_d_2000 40% 30% 0.192 0.9021.35 1.45 4 500100%1
4D0L_GSP_F_2000 80% 31% 0.132 0.9821.25 1.48 4 440100%1
5C46_GSP_F_2000 59% 16% 0.192 0.9742.16 1.56 3 620100%1
5FBW_GSP_B_301 51% 5% 0.181 0.9363.85 1.54 14 530100%1
1OIW_GSP_A_1174 49% 1% 0.148 0.8945.3 3.44 13 10110100%1
5FBR_GSP_B_301 49% 4% 0.187 0.9333.85 1.72 14 790100%1
4TMV_GSP_B_901 98% 43% 0.06 0.9841.09 1.11 2 310100%1
1AS0_GSP_A_355 98% 9% 0.064 0.9861.58 2.81 7 810100%1
2HF8_GSP_B_300 98% 18% 0.053 0.9742.07 1.51 4 720100%1
8VGA_GSP_A_402 98% 19% 0.057 0.9781.83 1.6 3 710100%1
1RLU_GSP_A_401 98% 21% 0.065 0.9841.89 1.4 2 500100%1