12V: (2S,3R,4R,5S,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-thiopyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate
12V is a Ligand Of Interest in 4GZ6 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4GZ6_12V_D_1501 | 66% | 8% | 0.176 | 0.981 | 2.25 | 2.3 | 7 | 12 | 1 | 0 | 100% | 1 |
| 4GZ6_12V_A_1501 | 54% | 8% | 0.201 | 0.969 | 2.25 | 2.31 | 8 | 12 | 2 | 0 | 100% | 1 |
| 4GZ6_12V_C_1501 | 50% | 9% | 0.209 | 0.96 | 2.24 | 2.28 | 6 | 11 | 2 | 0 | 100% | 1 |
| 4GZ6_12V_B_1501 | 48% | 8% | 0.219 | 0.965 | 2.29 | 2.29 | 7 | 12 | 1 | 0 | 100% | 1 |
| 4XIF_12V_D_1200 | 86% | 26% | 0.111 | 0.98 | 1.35 | 1.65 | 3 | 9 | 1 | 0 | 100% | 1 |
| 4GYY_12V_C_1501 | 83% | 12% | 0.115 | 0.974 | 1.82 | 2.2 | 6 | 12 | 1 | 0 | 100% | 1 |
| 5BNW_12V_A_1101 | 82% | 25% | 0.127 | 0.982 | 1.28 | 1.75 | 5 | 9 | 1 | 0 | 100% | 1 |
| 4XI9_12V_C_1200 | 81% | 25% | 0.122 | 0.974 | 1.23 | 1.8 | 4 | 10 | 0 | 0 | 100% | 0.8205 |
| 6IBO_12V_A_1101 | 73% | 8% | 0.145 | 0.974 | 2.4 | 2.23 | 8 | 11 | 1 | 0 | 100% | 1 |
| 5A01_12V_B_2060 | 72% | 26% | 0.149 | 0.974 | 1.29 | 1.72 | 2 | 9 | 1 | 0 | 100% | 1 |
