GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4M4S designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4M4S_GDP_A_530 | 91% | 46% | 0.099 | 0.985 | 0.97 | 1.12 | 1 | 2 | 2 | 0 | 100% | 0.9557 |
4RD0_GDP_A_501 | 97% | 47% | 0.065 | 0.981 | 0.86 | 1.18 | - | 4 | 0 | 0 | 100% | 1 |
4RD1_GDP_A_502 | 95% | 45% | 0.075 | 0.978 | 0.92 | 1.2 | 1 | 3 | 0 | 0 | 100% | 17 |
6I5M_GDP_A_501 | 95% | 46% | 0.088 | 0.991 | 0.79 | 1.28 | 1 | 4 | 0 | 0 | 100% | 1 |
4RD3_GDP_A_502 | 92% | 45% | 0.084 | 0.975 | 0.88 | 1.24 | 1 | 5 | 0 | 0 | 100% | 1 |
4RD6_GDP_A_501 | 87% | 53% | 0.112 | 0.984 | 0.83 | 0.98 | - | 1 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
4PZZ_GDP_A_201 | 100% | 54% | 0.035 | 0.989 | 0.92 | 0.86 | 1 | 1 | 0 | 0 | 100% | 1 |