Ligand validation:4MD1

L2P: 2,3-DI-PHYTANYL-GLYCEROL

L2P is a Ligand Of Interest in 4MD1 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4MD1_L2P_A_1001	28%	74%	0.099	0.9	0.28	0.71	-	-	0	0	17%	17.39
4MD1_L2P_A_1008	28%	79%	0.112	0.915	0.29	0.56	-	-	0	0	15%	15.22
4MD1_L2P_A_1016	25%	83%	0.113	0.905	0.32	0.45	-	-	0	0	11%	10.870000000000001
4MD1_L2P_A_1007	23%	85%	0.105	0.887	0.34	0.39	-	-	0	0	11%	10.870000000000001
4MD1_L2P_A_1003	22%	69%	0.123	0.881	0.3	0.89	-	-	0	0	20%	19.57
4MD1_L2P_A_1013	22%	68%	0.125	0.878	0.23	1	-	1	0	0	22%	0.2174
4MD1_L2P_A_1006	18%	71%	0.131	0.858	0.29	0.8	-	-	0	0	22%	0.2174
4MD1_L2P_A_1010	18%	55%	0.136	0.859	0.21	1.5	-	2	1	0	22%	0.2174
4MD1_L2P_A_1014	18%	61%	0.141	0.883	0.52	0.97	-	-	0	0	11%	10.870000000000001
4MD1_L2P_A_1009	16%	58%	0.138	0.854	0.5	1.11	-	-	1	0	15%	15.22
4MD1_L2P_A_1015	13%	85%	0.128	0.83	0.32	0.41	-	-	0	0	11%	10.870000000000001
4MD1_L2P_A_1017	12%	65%	0.157	0.847	0.24	1.08	-	-	2	0	11%	10.870000000000001
4MD1_L2P_A_1018	12%	62%	0.12	0.8	0.46	0.98	-	-	3	0	15%	15.22
4MD1_L2P_A_1004	11%	73%	0.123	0.776	0.52	0.54	-	-	0	0	20%	19.57
4MD1_L2P_A_1005	9%	67%	0.153	0.784	0.32	0.95	-	-	0	0	17%	17.39
4MD1_L2P_A_1011	8%	60%	0.167	0.772	0.38	1.12	-	1	1	0	24%	0.2391
4MD1_L2P_A_1012	6%	52%	0.163	0.73	0.69	1.16	-	1	4	0	26%	0.2609
4MD1_L2P_A_1019	5%	54%	0.268	0.787	0.5	1.27	-	3	5	0	41%	0.413
6GA3_L2P_A_311	55%	60%	0.157	0.926	0.65	0.87	-	2	0	0	100%	1
7XJE_L2P_A_303	51%	40%	0.13	0.905	0.64	1.69	-	7	2	1	87%	0.8696
6GAE_L2P_A_302	42%	61%	0.11	0.908	0.64	0.86	-	-	2	0	54%	0.5435
6GAA_L2P_A_302	41%	61%	0.113	0.909	0.64	0.86	-	-	3	0	54%	0.5435
6GAB_L2P_A_302	41%	61%	0.115	0.911	0.64	0.86	-	-	2	0	54%	0.5435
6GA5_L2P_A_302	40%	61%	0.115	0.908	0.64	0.86	-	-	1	0	54%	0.5435

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

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4MD1

L2P: 2,3-DI-PHYTANYL-GLYCEROL

L2P is a Ligand Of Interest in 4MD1 designated by the RCSB