GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4P3Y designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4P3Y_GDP_A_402 | 82% | 45% | 0.133 | 0.988 | 0.88 | 1.25 | - | 4 | 0 | 0 | 100% | 1 |
3U6B_GDP_A_402 | 91% | 61% | 0.101 | 0.987 | 0.9 | 0.62 | 1 | - | 0 | 0 | 100% | 1 |
2HCJ_GDP_A_999 | 88% | 53% | 0.106 | 0.982 | 0.94 | 0.88 | 2 | 3 | 0 | 0 | 100% | 1 |
5MI3_GDP_B_402 | 83% | 44% | 0.123 | 0.982 | 1.01 | 1.14 | 2 | 3 | 0 | 0 | 100% | 1 |
2HDN_GDP_L_6999 | 83% | 35% | 0.12 | 0.978 | 1.07 | 1.46 | 2 | 7 | 0 | 0 | 100% | 1 |
5MI8_GDP_A_403 | 83% | 55% | 0.12 | 0.978 | 0.85 | 0.87 | 2 | 2 | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |