GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4V5Q designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4V5Q_GDP_CZ_501 | 6% | 28% | 0.264 | 0.704 | 1.11 | 1.75 | 2 | 8 | 13 | 0 | 100% | 1 |
| 4V5Q_GDP_AZ_501 | 4% | 28% | 0.308 | 0.686 | 1.11 | 1.77 | 3 | 9 | 12 | 0 | 100% | 1 |
| 1HA3_GDP_A_406 | 99% | 55% | 0.055 | 0.986 | 1.01 | 0.73 | 1 | - | 1 | 0 | 100% | 1 |
| 1TUI_GDP_C_407 | 91% | 33% | 0.095 | 0.981 | 1.18 | 1.45 | 3 | 4 | 3 | 0 | 100% | 1 |
| 4V8Q_GDP_BZ_1003 | 73% | 29% | 0.14 | 0.969 | 1.37 | 1.46 | 2 | 5 | 2 | 0 | 100% | 1 |
| 4V5S_GDP_AZ_501 | 46% | 12% | 0.18 | 0.916 | 2.41 | 1.7 | 4 | 6 | 5 | 0 | 100% | 1 |
| 4V5P_GDP_CZ_501 | 36% | 28% | 0.169 | 0.861 | 1.29 | 1.59 | 2 | 5 | 6 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
